pip install --user micro-manager-precice.
Get the latest Micro Manager release
The Micro Manager can be installed using pip. Make sure preCICE is installed before installing the Micro Manager. The Micro Manager is compatible with preCICE version 2.3.0 and higher.
Option 1: Install from PyPI
The Micro Manager package has the name micro-manager-precice on PyPI. To install micro-manager-precice, run
pip install --user micro-manager-precice
Unless already installed, the dependencies will be installed by pip during the installation procedure. To enable crash handling by interpolation, the optional dependency sklearn is required. To install micro-manager-precice with sklearn, run
pip install --user micro-manager-precice[sklearn]
preCICE itself needs to be installed separately. If you encounter problems in the direct installation, see the dependencies section and optional dependency section below.
Option 2: Install manually
Required dependencies
Ensure that the following dependencies are installed:
- Python 3
- preCICE v2.3.0 or higher
- pyprecice: Python language bindings for preCICE
- numpy
- mpi4py
Optional dependencies
Clone the Micro Manager
git clone https://github.com/precice/micro-manager.git
Install manually
To install using pip, go to the directory micro-manager/ and run
pip install --user .
Adding optional dependencies works as above by adding them after the dot, e.g. .[sklearn].
Get the latest development version
If you want to use the latest development version of the Micro Manager, clone the develop branch and then build manually using pip.
Next step
After successfully installing the Micro Manager, proceed to preparing your micro simulation for the coupling.