pip install --user micro-manager-precice.
Get the latest Micro Manager release
Option 1: Install using pip
The Micro Manager package on PyPI is micro-manager-precice. To install, run
pip install micro-manager-precice
To enable crash handling by interpolation, the optional dependency sklearn is required. To install with sklearn, run
pip install micro-manager-precice[sklearn]
To use the Micro Manager for snapshot computation, the optional dependency h5py is required. To install with h5py, run
pip install micro-manager-precice[snapshot]
Option 2: Install manually
Required dependencies
Ensure that the following dependencies are installed:
Optional dependencies
Clone the Micro Manager
git clone https://github.com/precice/micro-manager.git
Install manually
To install using pip, go to the directory micro-manager/ and run
pip install .
Adding optional dependencies works as above by adding them after the dot, e.g. .[sklearn].
Get the latest development version
If you want to use the latest development version of the Micro Manager, clone the develop branch and then build manually using pip.
Next step
After successfully installing the Micro Manager, proceed to preparing your micro simulation for the coupling.